Predictive results

File Needed to get the predictive results:

Solution 1: directly use the software

Software Download

Solution2:

read directly from score matrix, python skill needed:

File description	Download Link
lncRNA index file	lncRNA_index
Gene index file	Gene_index
lncRNA ensemble/ name index	lncRNA_ensemble
Results score Matrix	Score Matrix
Matrix Reading code	Python Code

Please put all of these files into one folder, and then run the python code. Python packages Pandas and numpy is needed in order to read the matrix.

Some code examples:

lnc=’SNHG12′

#define your own lncRNA

gene=’A1CF’

#define your own gene/target

return_scores_from_matrix(‘SNHG1′,’A1CF’)

#return the score of this pair

return_top_lnc_m(lnc,20)

#return the top 20 scores of lnc

return_top_gene_m(gene,topk=20)

#return the top 20 scores of gene and

examples of return top results of A1CF:

code example

results are like this