This software is an auxiliary software to acquire the results of lncRNA-Top. By inputting any of the gene ensembl or lncRNA ensemble, the software will provide you with top calculated results from lncRNA-Top.
(A random-seed-based ensemble method (both RF and CNN involved) for predicting lncRNA-gene relationships.)
Please unzip the following file:
ZIP Windows : DOWNLOAD lncRNA-top 2.0
If the download speed is slow,
You can also try : Google drive copy
(Tested on Windows 10, 64 bits)
By inputting a LncRNA or Gene, plus the number of Top K, the interface will return the top k results of a specific gene or lncRNA.
By clicking the “Example” button, it will show an example of how to generate the top K (here are the top 10) predicted results of LncRNA “DUBR.” If we click the Gene’s TOP K, it will generate the top K scores of the “A1CF”.
By clicking the “save as File” button, the scores of the top results can be generated as CSV files for future use or future query.
The example of the generated file is as below:
| LncRNA | gene | scores |
| DUBR | AKT1 | 3.438072 |
| DUBR | STAT3 | 3.235551 |
| DUBR | CCND1 | 3.11534 |
| DUBR | CASP3 | 2.887786 |
| DUBR | MAPK1 | 2.607464 |
| DUBR | MARCKS | 2.567484 |
| DUBR | CDH1 | 2.552449 |
| DUBR | RB1 | 2.514191 |
| DUBR | SNAI1 | 2.424834 |
| DUBR | PRKAA1 | 2.391169 |