Pair-wise dataset

Dataset Source

LncRNA2Target (LC\ HC)

URL:

http://123.59.132.21/lncrna2target

Citation:

Cheng L, Wang P, Tian R, et al. LncRNA2Target v2. 0: a comprehensive database for target genes of lncRNAs in human and mouse[J]. Nucleic acids research, 2019, 47(D1): D140-D144.

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LncTarD  (IT)

URL:

https://lnctard.bio-database.com/

Citation:

Zhao H, Shi J, Zhang Y, et al. LncTarD: A manually-curated database of experimentally-supported functional lncRNA–target regulations in human diseases[J]. Nucleic acids research, 2020, 48(D1): D118-D126.

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Case Study (Case study dataset)

Statello L, Guo C J, Chen L L, et al. Gene regulation by long non-coding RNAs and its biological functions[J]. Nature reviews Molecular cell biology, 2021, 22(2): 96-118.

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Original Dataset(After filter)

Dataset	Download Links	Reference
IncTar.csv	IncTar_remove_refine_889
CaseStudy.csv	Case6, Case7, Case8	6 for IT,LC, 7 for IT, 8 for LC
lncrna_target_high_throughput V3.csv	HC_45331
Incrna_target_Low_throughput V3.csv	LC_remove_refine_493

Experimental Dataset (Constructed dataset, to train the models)

tips: still need features from lncRNA and gene to construct the constructed embedding dataset.

Contructed embedding dataset is the input materials for the machine learning/deep learning algorithms.